0.05701 * corrected a dirty cpan upload 0.05700 * re-dumped with latest schema loader devel version * stripped _id suffixes for a number of relationships that still had them. Hopefully the schema loader patch used for this will make it into schema loader releases. List of changed relationship names: lib/Bio/Chado/Schema/CellLine/CellLine.pm cell_line_relationship_subject_ids -> cell_line_relationship_subjects cell_line_relationship_object_ids -> cell_line_relationship_objects lib/Bio/Chado/Schema/Contact/Contact.pm contact_relationship_object_ids -> contact_relationship_objects contact_relationship_subject_ids -> contact_relationship_subjects lib/Bio/Chado/Schema/Cv/Cvterm.pm arraydesign_platformtype_ids -> arraydesign_platformtypes arraydesign_substratetype_ids -> arraydesign_substratetypes cvtermpath_type_ids -> cvtermpath_types cvtermpath_object_ids -> cvtermpath_objects cvtermpath_subject_ids -> cvtermpath_subjects cvtermprop_type_ids -> cvtermprop_types cvtermprop_cvterm_ids -> cvtermprop_cvterms cvterm_relationship_type_ids -> cvterm_relationship_types cvterm_relationship_object_ids -> cvterm_relationship_objects cvterm_relationship_subject_ids -> cvterm_relationship_subjects cvtermsynonym_type_ids -> cvtermsynonym_types cvtermsynonym_cvterm_ids -> cvtermsynonym_cvterms expression_cvterm_cvterm_ids -> expression_cvterm_cvterms expression_cvterm_cvterm_type_ids -> expression_cvterm_cvterm_types phenotype_assay_ids -> phenotype_assays phenotype_attr_ids -> phenotype_attrs phenotype_observable_ids -> phenotype_observables phenotype_cvalue_ids -> phenotype_cvalues protocolparam_unittype_ids -> protocolparam_unittypes protocolparam_datatype_ids -> protocolparam_datatypes lib/Bio/Chado/Schema/Genetic/Environment.pm phenotype_comparison_environment2_ids -> phenotype_comparison_environment2s phenotype_comparison_environment1_ids -> phenotype_comparison_environment1s lib/Bio/Chado/Schema/Genetic/Genotype.pm phenotype_comparison_genotype1_ids -> phenotype_comparison_genotype1s phenotype_comparison_genotype2_ids -> phenotype_comparison_genotype2s lib/Bio/Chado/Schema/Mage/Acquisition.pm acquisition_relationship_subject_ids -> acquisition_relationship_subjects acquisition_relationship_object_ids -> acquisition_relationship_objects lib/Bio/Chado/Schema/Mage/Biomaterial.pm biomaterial_relationship_subject_ids -> biomaterial_relationship_subjects biomaterial_relationship_object_ids -> biomaterial_relationship_objects lib/Bio/Chado/Schema/Mage/Element.pm element_relationship_object_ids -> element_relationship_objects element_relationship_subject_ids -> element_relationship_subjects lib/Bio/Chado/Schema/Mage/Elementresult.pm elementresult_relationship_subject_ids -> elementresult_relationship_subjects elementresult_relationship_object_ids -> elementresult_relationship_objects lib/Bio/Chado/Schema/Mage/Quantification.pm quantification_relationship_subject_ids -> quantification_relationship_subjects quantification_relationship_object_ids -> quantification_relationship_objects lib/Bio/Chado/Schema/Phenotype/Phenotype.pm phenotype_comparison_phenotype1_ids -> phenotype_comparison_phenotype1s phenotype_comparison_phenotype2_ids -> phenotype_comparison_phenotype2s lib/Bio/Chado/Schema/Phylogeny/Phylonode.pm phylonode_relationship_object_ids -> phylonode_relationship_objects phylonode_relationship_subject_ids -> phylonode_relationship_subjects lib/Bio/Chado/Schema/Pub/Pub.pm pub_relationship_object_ids -> pub_relationship_objects pub_relationship_subject_ids -> pub_relationship_subjects lib/Bio/Chado/Schema/Sequence/Feature.pm feature_genotype_feature_ids -> feature_genotype_features feature_genotype_chromosome_ids -> feature_genotype_chromosomes featureloc_feature_ids -> featureloc_features featureloc_srcfeature_ids -> featureloc_srcfeatures featurepos_feature_ids -> featurepos_features featurepos_map_feature_ids -> featurepos_map_features featurerange_leftendf_ids -> featurerange_leftendfs featurerange_rightstartf_ids -> featurerange_rightstartfs featurerange_rightendf_ids -> featurerange_rightendfs featurerange_leftstartf_ids -> featurerange_leftstartfs featurerange_feature_ids -> featurerange_features feature_relationship_subject_ids -> feature_relationship_subjects feature_relationship_object_ids -> feature_relationship_objects lib/Bio/Chado/Schema/Stock/Stock.pm stock_relationship_subject_ids -> stock_relationship_subjects stock_relationship_object_ids -> stock_relationship_objects * new create_with() function for creating new cvterms * more POD tweaking to improve CPAN indexing 0.05501 * tweaked per-chado-module POD for better CPAN indexing 0.05500 * much better POD, added autogenerated links from Schema.pm to per-chado-module POD files, and links to chado module pod files in Schema.pm * improved slide presentation to the version given at January 2010 GMOD meeting 0.05001 * test count bugfix 0.05000 * Added DBICSL-generated POD * Turned off DBIC's cascade_delete and cascade_copy on all relations (thanks to Siddhartha Basu for troubleshooting). Things break if these are on and you don't have every part of the schema installed. 0.04300 * Corrected a rather dirty CPAN upload, Util.pod file was in the wrong place. 0.04200 * removed Util.pm, replaced with Util.pod for documentation, moved the actual Util methods into a separate package inside Schema.pm. Thanks to Aure Bombarely. 0.04100 * added missing dependency on BioPerl 0.04000 * added new modules and relationships for the newly released cell_line module in Chado 0.03100 * added $VERSION to Bio::Chado::Schema to support CPAN indexer, bumped version by several numbers to force CPAN reindexing 0.022 * update to schema dumping script now finds many more inter-module relationships * added the new inter-module relationships found by the dumping script 0.01_03 * changed namespace to Bio::Chado instead of Chado 0.01_01 * Initial release.