0.211420 2021-05-22 22:08:56+02:00 Europe/Brussels - Addition - Extended the parser code for handling antiSMASH 5.1.1 report format 0.201670 2020-06-15 15:04:33+02:00 Europe/Brussels - Fixes - bin::export_bgc_sql_tables: fixed the redundancy of IDs for modules extracted from antiSMASH v5.1 reports and shared between several gene clusters - Parser: fixed the absence of value for the size of modules extracted from antiSMASH v5.1 reports 0.200700 2020-03-10 20:49:48+01:00 Europe/Brussels - Changes - Roles::Modulable: improved the module delineation algorithm 0.200290 2020-01-29 16:10:33+01:00 Europe/Brussels - Addition - Roles::Modulable::Component: added a new class for handling the old module delineation algorithm - Changes - Roles::Modulable: implemented a new algorithm for the module delineation - Roles::Domainable: modified symbol and class regexes for handling antiSMASH v5.1 nomenclature - binaries: changed default value 'selection' to 'substrate-selection' for --module-delineation option - Fixes - bin::export_bgc_sql_tables: fixed a bug in the output writing occuring when performing consecutive analyses - bin::extract_bgc_sequences: updated the calling of module coordinates 0.200150 2020-01-15 22:07:36+01:00 Europe/Brussels - Additions - Parser & Roles: implemented the extraction of antiSMASH v5.1 modules 0.193230 2019-11-19 09:39:59+01:00 Europe/Brussels - Additions - Added module delineation option in bin/ scripts 0.193080 2019-11-04 17:56:41+01:00 Europe/Brussels - Additions - Added example_data/, an example dataset repository - export_bgc_sql_tables.pl: added dna_coordinates, dna_begin and dna_end columns in Clusters table - Changes - draw_bgc_maps.pl: changed the color of gene blocks (gray instead of red). - Fixes - Parser: added a fix for domain duplicates occuring in regions.js files 0.192560 2019-09-13 16:32:18+02:00 Europe/Brussels - Fixes - bin::export_bgc_sql_tables: fixed key link between Domains_plus and Sequences tables 0.192540 2019-09-11 10:56:03+02:00 Europe/Brussels - Fixes - Roles::Fillable/Refiner::GenePlus: activated 'from seq' mode for generating exploratory Domains objects - bin::export_bgc_sql_tables: fixed Domains_explus table export 0.192240 2019-08-12 23:38:59+02:00 Europe/Brussels - Fixes - Ranking of cluster elements for antiSMASH version 5 0.191800 2019-06-29 15:01:31+02:00 Europe/Brussels - Additions - documentation: added Manual.pod - Roles::Domainable: added a class attribute - Parser: added is_cluster_type_ok method - Changes - binaries: renamed '--type' option in '--types' (repeatable argument) - binaries: improved the '--help' documentation - Roles::Fillable: removed _get_class method - Fixes - all: fixed minor bugs 0.191620 2019-06-11 22:32:01+02:00 Europe/Brussels - First release