Revision history for PomBase-Chobo

0.030     2020-12-24 13:34:14
          Fix bug caused by de-quoting change in v0.028

0.029     2020-12-22 00:39:02
          Fix check for duplicate cvterm definition dbxrefs

0.028     2020-12-16 12:20:19
          Remove backslash escapes in dbxref accessions

0.027     2020-12-11 16:06:38
          Catch colon at start or end of relationship name

0.026     2018-11-01 17:15:07
          Don't merge an obsolete term with a non-obsolete using alt_id

0.025     2018-11-01 16:12:28
          Ignore alt_ids on obsolete terms
          See: https://github.com/pombase/chobo/issues/14

0.024     2018-10-26 08:29:17
          Require Clone version 0.41 to avoid crash

0.023     2018-10-25 16:40:14
          Remove dependency on List::Util

0.022     2018-10-19 11:27:38
          Fixes to cope with the disease ontology OBO file

0.021     2018-02-20 18:06:18
          Require an even more recent version of List::Util to prevent
          test failures.

0.020     2018-02-19 15:19:37
          Warn if "def:" lines differ when merging terms

0.019     2018-02-16 18:10:46
          Require a version of List::Util that has the uniq() function to
          prevent failures on older Perls.

0.018     2018-02-14 20:06:21
          Fixes several bugs we storing dbxrefs from "def:" lines

0.017     2018-02-14 17:28:35
          Fix bug handling odd dbxrefs that have no accession

0.016     2018-02-14 17:16:01
          Store dbxrefs for term definitions

0.015     2018-02-14 11:05:39
          Bug fix: allow single character synonyms (eg. "I" from so-simple.obo)

0.014     2018-02-13 23:43:39
          Allow escaped double quotes in synonyms - example from chebi.obo:
          "alpha-GalCer-6\"-(4-chlorophenyl)carbamate" RELATED [ChEBI:]

0.013     2018-02-13 20:22:12
          Store the data-version from the OBO file in the cvprop table

0.012     2017-02-22 11:36:03
          Exit with a non-zero code when parsing or loading fails

0.011     2016-08-18 13:09:42
          Ignore trailing modifiers - See section "Trailing Modifiers" in:
          ftp://ftp.geneontology.org/pub/go/www/GO.format.obo-1_4.shtml#S.1.4

0.010     2016-08-11 11:18:33
          Append "(obsolete)" to names of obsolete terms hen storing

0.009     2016-07-21 20:34:13
          Fix parsing for stanzas that have no subset: lines

0.008     2016-07-21 20:24:28
          Doc fixes
          Fix term synonyms parsing and add a test for it
          Add subsets() and is_obsolete() methods to OntologyTerm

0.007     2016-07-20 21:20:12
          Fix OBO parser to read def: and comment: lines
          Store definition in cvterm rows

0.006     2016-06-13 12:34:29
          Use "relations" as the CV name for RO, see:
            https://github.com/GMOD/Chado/issues/17
          Documentation improvements

0.005     2016-06-08 15:47:33
          Improve README.pod
          Improve chobo_load docs
          The dbi:Pg: prefix on the database name is now optional

0.004     2016-06-05 16:10:46
          Handle reloading cv, db and dbxref rows
          Check constraints after inserting each row in the test DB

0.003     2016-06-02 14:46:28
          Now explicity require Perl v5.20
          (Internal) Builds correctly on Travis-CI

0.002     2016-06-01 21:58:33
          Fixed installation of chobo_load by removing Build.PL

0.001     2016-06-01 21:02:38
          Initial release