Revision history for HackaMol

0.00_20   2014-05-27 20:41:40EDT-0400 America/New_York
    * added fix_serial method to AtomGroupRole 
    * find_disulfide_bonds generalized to work with nonprotein sulfurs 
    * GSSG examples added

0.00_19   2014-05-04 20:48:54EDT-0400 America/New_York
    * examples are reorganized, still not organized enough #TODO
    * PathRole files are now 'rw'.  The 'rw' is hard to resist 

0.00_18   2014-04-23 14:15:49EDT-0400 America/New_York
    * merged FileRole and ScratchRole into PathRole

0.00_17   2014-04-23 10:46:53EDT-0400 America/New_York
    * switched FileRole and ScratchRole over to MooseX::Types::Path::Tiny

0.00_16   2014-04-22 14:27:46EDT-0400 America/New_York
    * added FileRole for managing files. Loaded into HackaMol.pm builder
    * added ExeRole  for managing executables.  Loaded into HackaMol.pm builder. Limited functionality
      can/should be tested with scripts that run exe, capture output, etc.  use Capture::Tiny 
  
0.00_15   2014-04-20 20:54:36EDT-0400 America/New_York
    * minor update test for scratchrole

0.00_14   2014-04-17 21:07:40EDT-0400 America/New_York
    * added ScratchRole for managing directories. Available in HackaMol builder

0.00_13   2014-04-15 22:09:31EDT-0400 America/New_York
    * added hush_read to MolReadRole    
    * added MooseX::StrictConstructor to classes
  
0.00_12   2014-04-07 10:48:37EDT-0400 America/New_York
    * added aa321 to PdbRole; gens 1-letter aa code from resname

0.00_11   2014-04-02 16:46:03EDT-0400 America/New_York
    * minor fix for pdbqt reading: A -> C
  
0.00_10   2014-04-02 15:27:08EDT-0400 America/New_York
    * AtomGroupRole adjustments:
      - added print_pdb_ts and print_xyz_ts for printing many configs
      - improved tmax method 

0.00_09   2014-04-01 17:46:14EDT-0400 America/New_York
    * PDB reading will atom->is_dirty if the element(s) unknown. Carp warning
    * added minimal pdbqt reading (i.e. no branch info pulled)

0.00_08   2014-02-20 14:53:19 America/New_York
    * improve PDB reading and writing 
    * for PDB guess element from atom name 
 
0.00_07   2013-11-19 22:57:36 America/New_York
    * Reduced size of test directory
    * Improved reading of PDBs with multiple (sometimes erroneous) models

0.00_06   2013-11-18 21:28:05 America/New_York
    * Added find_disulfides to HackaMol.pm
    * Added read_file_mol to HackaMol.pm
    * Added read_file_append_mol to HackaMol.pm
    * Adjusted reading and writing of PDB files 

0.00_05   2013-10-02 16:19:31 America/New_York
    * Adjusted builders in HackaMol.pm added pdb_print for groups
  
0.00_04   2013-09-20 06:56:56 America/New_York
    * Fixing one test that needs recent MVR to work    

0.00_03   2013-09-19 21:51:03 America/New_York
    * Fixing POD and tests further 

0.00_02   2013-09-19 16:53:36 America/New_York
    * Fixing POD and tests based on how things look and cpantesters

0.00_01   2013-09-18 23:46:53 America/New_York
    * First Devel release