0.252830  2025-10-10 10:50:33+02:00 Europe/Brussels
    - Additions:
        binaries: new script cdhit-tax-filter.pl
        binaries: annotate-ali.pl now allows to customize the annotation report
    - Changes:
      - Exonerate::Aligned: removed dependence on deprecated `switch` constructs
    - Fixes:
      - binaries: fixed a bug in annotate-ali.pl where --hit-list captured tags from later hits
      - Blast: updated tests to BLAST 2.17.0

0.251060  2025-04-16 22:44:33+02:00 Europe/Brussels
    - Fixes
      - Blast: fixed a seq id bug in temporary databases with >10000 seqs

0.242720  2024-09-28 15:28:56+02:00 Europe/Brussels
    - Additions
      - Blast: expanded list of supported remote databases (e.g., core_nt)
      - Mafft: added support for options --addlong and --addfragments
      - binaries: new script annotate-ali.pl
    - Changes
      - Blast: upgraded driver to better handle version 5 of BLAST databases
    - Fixes
      - Blast: updated tests to BLAST 2.16.0
      - Mafft: fixed command-line bug with align_all method

0.210160  2021-01-16 22:27:34+01:00 Europe/Brussels
    - Fixes
      - Blast: made Blastable role taint-safe
      - Blast: remote tests are now disabled by default
      - Exonerate: now forces Homebrew to install historical version 2.2.0
      - Hmmer: updated tests to HMMER 3.3
      - Mafft: updated tests to MAFFT 7.453

0.193030  2019-10-30 21:33:56+01:00 Europe/Brussels
    - Fixes
      - ClustalO: fixed module filename (Clustalo.pm => ClustalO.pm)

0.191910  2019-07-10 15:50:22+02:00 Europe/Rome
    - Additions
      - all: now try to install external dependencies using Homebrew
      - Cap3: added support for optional args to constructor
      - CdHit: added autoselection of cd-hit-est for nt seqs
    - Changes
      - all: improved warning and error messages (now prefixed by [BMD])
      - Blast: now explicitly requires perl-5.18
    - Fixes
      - Hmmer: updated tests to HMMER 3.2.1
      - Cap3: fixed inconsistent contig names between seqs and clusters

0.181160  2018-04-26 23:43:10+02:00 Europe/Brussels
    - Additions
      - CdHit: added support for optional args to constructor
    - Fixes
      - Blast: makeblastdb and blastdbcmd now also honor BMD_BLAST_BINDIR
      - Blast: disabled some tests failing due to unstable results
      
0.180770  2018-03-18 14:40:30+01:00 Europe/Brussels
    - Additions
      - Blast: added support for BMD_BLAST_BINDIR environment variable
      - ClustalO: new driver
      - Mafft: new driver
    - Fixes
      - CdHit: tests are now disabled in case of missing dependency

0.180270  2018-01-28 00:13:26+01:00 Europe/Brussels
    - Additions
      - CdHit: new driver
    - Changes
      - Blast: changed API for a database-centered view; breaks existing code!
      - Hmmer: changed API for a model-centered view; breaks existing code!
    - Fixes
      - Blast::Database: now handles multipart databases (such as local nr)
      - Blast: updated remote tests to BLAST 2.7.1+

0.173510  2017-12-17 15:32:25+01:00 Europe/Brussels
    - first release