0.180230 2018-01-23 23:44:19+01:00 Europe/Brussels - Additions - Ali: added option to allow more control on FASTA file format - Ali::Stash: improved documentation - Ali::Temporary: added option to control the lifespan of FASTA file - Changes - GeneticCode::Factory: hard-coded NCBI gc.prt file for robustness - Fixes - IdList:: fixed regression bug preventing FortyTwo to work - Taxonomy: improved robustness of setup-taxdir.pl-related methods - Taxonomy: better described dependencies for more robust deployment 0.180190 2018-01-19 10:00:47+01:00 Europe/Brussels - Changes - Ali: improved consistency of guessing default value (always on) - Seq: ungapped seqs ending in '*' are now trimmed and considered non-aligned - Fixes - Ali::Temporary: fixed regression bug preventing IdList application - GeneticCode::Factory: tests should now pass on more platforms - PostPred::Composition: tests should now pass on more platforms 0.180140 2018-01-14 22:36:55+01:00 Europe/Brussels - Additions - Ali::Temporary: new args attribute (to fine-tune FASTA file creation) - Ali::Temporary: improved documentation 0.173620 2017-12-29 00:58:54+01:00 Europe/Brussels - Additions - Ali: new clone method - Ali: improved documentation - Changes - Tree: shorten_ids/restore_ids now ignore missing ids in IdMapper - Fixes - Rates: tests should now pass on more platforms - Taxonomy: GCA-based taxon ids now retain their true taxonomic rank 0.173500 2017-12-17 00:35:51+01:00 Europe/Brussels - Additions - binaries: new script split-matrix.pl (to extract genes from a supermatrix) - Changes - Taxonomy: LCA inference algorithm can now follow a majority-rule approach - Fixes - Taxonomy: tests are now disabled by default 0.173470 2017-12-13 09:14:04+01:00 Europe/Brussels - first release