seq1 = cn416, 630 bp
seq2 = Contig147.fa (>Contig147), 1086 bp

>cn416 lastmodified=[2002-10-29 11:40:27] project=[B3501] length=[630] clusterid=[371] coverage=[1] crawid=[1] sequencecount=[2] longestsequence=[k9k11j2.f1] sequences=[k9k11j2.f1|k9k11j2.f1C] clone=[|k9k11j2] 
>Contig147

36-132  (191-286)   89% <-
133-191  (343-401)   93%

      0     .    :    .    :    .    :    .    :    .    :
     36 AAAGCCATGCAATGCATCCCATGATACCAAAGATAAAATATCCAAAAATC
        |||||||||||||||||||-||||||||||||| || |||||||||||||
    191 AAAGCCATGCAATGCATCC ATGATACCAAAGACAATATATCCAAAAATC

     50     .    :    .    :    .    :    .    :    .    :
     86 CATGACCGATCCTGATGCAATAACCAAGAGACCGTTTATCCCGGGAA   
         | ||  |||| | ||||||||||||||||||| |||||||||||||<<<
    240 TAAGATTGATCATCATGCAATAACCAAGAGACCCTTTATCCCGGGAACTA

    100     .    :    .    :    .    :    .    :    .    :
    133       TGCCACAACGTAGTCCTTCTGTACATCCTGAACATTTCCATCAT
        ...<<<|||||||||||||||||| |||||||||||||||||||||||||
    290 ...CACTGCCACAACGTAGTCCTTTTGTACATCCTGAACATTTCCATCAT

    150     .    :    .
    177 CATCAACGAA AAGTA
        |||| |||||-||-||
    387 CATCTACGAACAA TA